31622 MATE_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31622 chr_1 MATE_like superfamily 1665391 1667217 + MATE_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445147 Thaps31622.3, Thaps31622.4, Thaps31622.2, Thaps31622.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0466

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9467

bd950

(bd950) NA
0.9326

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9257

bd758

(bd758) NA
0.9201

bd1893

(bd1893) NA
0.92

bd718

(bd718) PRK10387
0.9186

bd463

(bd463) Aa_trans superfamily
0.9099

bd211

(bd211) Maf_Ham1 superfamily
0.9089

bd1214

(bd1214) KISc_C_terminal
0.9076

bd1078

(bd1078) NA
0.9063

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MATE_like superfamily Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins... - 187.768 3.51E-53 99 - 544 superfamily 263758
NorM Na+-driven multidrug efflux pump [Defense mechanisms] - 135.045 1.16E-34 115 - 545 multi-dom 223608

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49843 PHATRDRAFT_49843 158539 326311 441877 Not available AT2G21340.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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