31652 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31652 chr_1 HMGB-UBF_HMG-box 403060 403473 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7447623 Thaps31652.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0478

Most Highly Correlated Transcripts

5285

HMGB-UBF_HMG-box
0.891

5552

hypothetical protein
0.8755

4276

hypothetical protein
0.8686

34590

nt_trans superfamily
0.8641

25272

Atg14
0.8636

5689

HA
0.8595

8564

hypothetical protein
0.8576

268825

COG5647
0.8534

11441

hypothetical protein
0.8514

8691

hypothetical protein
0.8511

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 68.4233 3.75E-16 6 - 67 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 68.4233 3.75E-16 6 - 67 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 142586 147735 197398 Not available AT1G32520.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

GO:0000785

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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