32201 Cob-chelat-sub
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32201 chr_2 Cob-chelat-sub 1952122 1954494 - Cob-chelat-sub

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps32201.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0208
 0.25

Most Highly Correlated Transcripts

270340

hypothetical protein
0.9995

10234

PLN00093
0.9672

2356

hypothetical protein
0.9665

bd218

(bd218) Chloroa_b-bind superfamily
0.9659

575

PRK00062
0.9656

719

PLN02433
0.9625

1953

hypothetical protein
0.9571

5077

PLN00015
0.9548

1049

MviM
0.9536

2036

hypothetical protein
0.9524

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In... cl00057 188.639 2.02E-55 582 - 782 specific 238728
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 188.639 2.02E-55 582 - 782 superfamily 260163
Cob-chelat-sub cobaltochelatase subunit; Cobaltochelatase is responsible for the insertion of cobalt into the... - 547.364 0 88 - 768 multi-dom 233870

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33017 PHATRDRAFT_33017 Not available 241518 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015979 GO:0015995 GO:0016851 GO:0000166 GO:0017111 -

GO:0015979

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

GO:0015995

chlorophyll biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
GO Category: 
BP

GO:0016851

magnesium chelatase activity

Details: 
Catalysis of the reaction: ATP + H(2)O + Mg(2+) + protoporphyrin IX = ADP + 2 H(+) + magnesium protoporphyrin IX + phosphate.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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