575 PRK00062
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
575 chr_7 PRK00062 683060 684522 - PRK00062

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps575.1, Thaps575.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0142
 0.24

Most Highly Correlated Transcripts

575

PRK00062
1

2356

hypothetical protein
0.9684

32201

Cob-chelat-sub
0.9656

719

PLN02433
0.9614

1953

hypothetical protein
0.9612

11757

hypothetical protein
0.9606

10234

PLN00093
0.9525

5077

PLN00015
0.9514

268304

hypothetical protein
0.95

261232

URO-D
0.9483

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-... cl18945 387.309 6.08E-131 51 - 445 specific 99735
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 387.309 6.08E-131 51 - 445 superfamily 267298
PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional - 780.788 0 38 - 448 multi-dom 234607

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36347 PHATRDRAFT_36347 265063 188191 437052 Cre03.g158000.t1.2 AT5G63570.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005737 GO:0006779 GO:0042286 GO:0008483 GO:0030170 -

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

GO:0042286

glutamate-1-semialdehyde 2,1-aminomutase activity

Details: 
Catalysis of the reaction: (S)-4-amino-5-oxopentanoate = 5-aminolevulinate.
GO Category: 
MF

GO:0008483

transaminase activity

Details: 
Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
GO Category: 
MF

GO:0030170

pyridoxal phosphate binding

Details: 
Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
GO Category: 
MF

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