32546 (DES1) Delta6-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32546 chr_3 (DES1) Delta6-FADS-like 1053925 1055456 - Delta6-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7451669 Thaps32546.2, Thaps32546.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0092
 0.42

Most Highly Correlated Transcripts

bd1757

(bd1757) NA
0.9047

268343

NA
0.8996

41005

odpB
0.8873

262977

NA
0.8841

23357

PLN02779
0.8804

41113

(DES3) PLN03199
0.8764

14192

PLN02449
0.8731

bd1216

(bd1216) Delta6-FADS-like
0.8625

21604

Abhydrolase_3
0.8612

31829

CBS_like
0.861

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes:... cl00615 183.997 6.06E-55 169 - 439 specific 239583
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 183.997 6.06E-55 169 - 439 superfamily 260534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46830 PHATRDRAFT_46830 273440 Not available Not available Not available Not available 350624

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 GO:0016213 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

GO:0016213

linoleoyl-CoA desaturase activity

Details: 
Catalysis of the reaction: linoleoyl-CoA + reduced acceptor + O2 = gamma-linolenoyl-CoA + acceptor + 2 H2O.
GO Category: 
MF

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