33018 (Lhcf6) PLN00120Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33018	chr_3	(Lhcf6) PLN00120	514856	515462	-	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444045	Thaps33018.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0262	0.15	400 2500

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9934	bd1820 (bd1820) Fasciclin 0.9825	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9819	31749 Chloroa_b-bind superfamily 0.9766	2845 Chloroa_b-bind superfamily 0.9755	34276 Chloroa_b-bind 0.9755
4882 (Lhcr4) fucoxanthin chl a/c light-harvesting protein 0.973	2342 (Lhcr11) fucoxanthin chlorophyll a/c light-harvesting protein 0.9726	270222 0.9714	22747 (Lhcr10) fucoxanthin chlorophyll a/c light-harvesting protein 0.9704

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	322.463	1.65E-112	17 - 201	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	322.463	1.65E-112	17 - 201	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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