33104 LDH_like_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33104 chr_3 LDH_like_2 975024 976018 - LDH_like_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448749 Thaps33104.2, Thaps33104.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0140
 0.29

Most Highly Correlated Transcripts

21978

hypothetical protein
0.9218

8349

NADB_Rossmann superfamily
0.9181

35401

COG0523
0.9147

29867

(ACS2_1) PLN02736
0.9146

31829

CBS_like
0.9005

1417

GpcrRhopsn4 superfamily
0.892

34810

Calreticulin
0.8895

6209

Amidohydro_2
0.8855

1456

(IDH1) IDH superfamily
0.885

263422

(BIP3) PTZ00009
0.8787

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LDH_like_2 D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (... cl17240 464.995 5.74E-165 15 - 302 specific 240659
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 464.995 5.74E-165 15 - 302 superfamily 266580
LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme... - 284.895 2.43E-94 14 - 302 multi-dom 223980

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1469 PHATRDRAFT_bd1469 207636 207572 313576 Cre07.g324550.t1.1 AT4G34200.1 503109

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006564 GO:0016616 GO:0000252 GO:0000253 GO:0004448 GO:0004495 GO:0008875 GO:0016229 GO:0018451 GO:0018452 GO:0018453 GO:0048258 -

GO:0006564

L-serine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
GO Category: 
BP

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0000252

C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity

Details: 
Catalysis of the reaction: 3-beta-hydroxy-4-beta-methyl-5-alpha-cholesta-8,24-dien-4-alpha-carboxylate + NAD(P)+ = 4-alpha-methyl-5-alpha-cholesta-8,24-dien-3-one + CO2 + NAD(P)H.
GO Category: 
MF

GO:0000253

3-keto sterol reductase activity

Details: 
Catalysis of the reaction: a 3-beta-hydroxyl sterol + NADP+ = a 3-keto sterol + NADPH + H(+).
GO Category: 
MF

GO:0004448

isocitrate dehydrogenase activity

Details: 
Catalysis of the reaction: isocitrate + acceptor = 2-oxoglutarate + CO2 + reduced acceptor.
GO Category: 
MF

GO:0004495

mevaldate reductase activity

Details: 
Catalysis of the reaction: (R)-mevalonate + acceptor = mevaldate + reduced acceptor.
GO Category: 
MF

GO:0008875

gluconate dehydrogenase activity

Details: 
Catalysis of the reaction: D-gluconate + NADP+ = dehydro-D-gluconate + NADPH + H+.
GO Category: 
MF

GO:0016229

steroid dehydrogenase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which one substrate is a sterol derivative.
GO Category: 
MF

GO:0018451

epoxide dehydrogenase activity

Details: 
Catalysis of the reaction: ethene oxide + NAD+ + CoA-SH = NADH + H+ + acetyl-CoA.
GO Category: 
MF

GO:0018452

5-exo-hydroxycamphor dehydrogenase activity

Details: 
Catalysis of the reaction: 5-exo-hydroxycamphor + NAD+ = NADH + H+ + 2,5-diketocamphane.
GO Category: 
MF

GO:0018453

2-hydroxytetrahydrofuran dehydrogenase activity

Details: 
Catalysis of the reaction: 2-hydroxytetrahydrofuran = 2 H+ + 2 e- + butyrolactone.
GO Category: 
MF

GO:0048258

3-ketoglucose-reductase activity

Details: 
Catalysis of the reaction: NADP+ + 3-dehydro-alpha-D-glucose = NADPH + alpha-D-glucose.
GO Category: 
MF

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