35401 COG0523
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35401 chr_7 COG0523 870225 872102 - COG0523

Synonyms

NCBI ID Ensembl Genomes exon ID
7444103 Thaps35401.4, Thaps35401.3, Thaps35401.2, Thaps35401.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0140
 0.29

Most Highly Correlated Transcripts

6692

hypothetical protein
0.9159

263422

(BIP3) PTZ00009
0.9154

33104

LDH_like_2
0.9147

36037

Trypsin_2
0.9104

1788

hypothetical protein
0.9071

262819

TPR
0.906

31829

CBS_like
0.9057

7886

hypothetical protein
0.9045

29867

(ACS2_1) PLN02736
0.9031

6209

Amidohydro_2
0.8966

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
cobW CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression... cl17203 154.32 6.05E-44 85 - 309 specific 251330
Fer4_NifH superfamily The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain.... - 154.32 6.05E-44 85 - 309 superfamily 266552
CobW_C Cobalamin synthesis protein cobW C-terminal domain; CobW proteins are generally found proximal to... cl08458 101.905 4.90E-26 355 - 488 specific 214844
CobW_C superfamily Cobalamin synthesis protein cobW C-terminal domain; This is a large and diverse family of putative... - 101.905 4.90E-26 355 - 488 superfamily 263667
COG0523 Putative GTPases (G3E family) [General function prediction only] - 262.616 8.24E-83 84 - 490 multi-dom 223597

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42902 PHATRDRAFT_42902 196867 210539 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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