33316 (DGD1) UGD_SDR_e
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33316 chr_4 (DGD1) UGD_SDR_e 273040 275096 - UGD_SDR_e

Synonyms

NCBI ID Ensembl Genomes exon ID
7446752 Thaps33316.1, Thaps33316.3, Thaps33316.4, Thaps33316.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0013

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0283
 0.35

Most Highly Correlated Transcripts

270222

0.9216

bd1837

(bd1837) NA
0.9074

23427

hypothetical protein
0.9016

263883

hypothetical protein
0.8633

23953

hypothetical protein
0.8624

31829

CBS_like
0.853

268124

COG0429
0.8463

8784

hypothetical protein
0.8427

3126

plant_peroxidase_like superfamily
0.8409

8414

NA
0.8402

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UGD_SDR_e UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs; UGD catalyzes the... cl09931 598.467 0 253 - 555 specific 187541
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 598.467 0 253 - 555 superfamily 263925
WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate... - 239.074 2.39E-73 253 - 561 multi-dom 223528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 196825 238101 Not available Not available AT3G53520.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003824 GO:0009225 GO:0008460 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0009225

nucleotide-sugar metabolic process

Details: 
The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0008460

dTDP-glucose 4,6-dehydratase activity

Details: 
Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O.
GO Category: 
MF

Add comment

Log in to post comments