33476 diphth2_RThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33476	chr_4	diphth2_R	1208521	1210327	-	diphth2_R

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447974	Thaps33476.3, Thaps33476.2, Thaps33476.5, Thaps33476.6, Thaps33476.4, Thaps33476.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0096	0.39	0.00000031 0.00000074

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9389	22965 SrmB 0.8996	20930 DRE_TIM_metallolyase superfamily 0.8949	9017 hypothetical protein 0.8926	21654 hypothetical protein 0.8877	4574 hypothetical protein 0.8865
23812 TrmA 0.8852	22627 hypothetical protein 0.8813	25247 Nudix_Hydrolase superfamily 0.878	34596 WD40 0.8774

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
diphth2_R		diphthamide biosynthesis enzyme Dph1/Dph2 domain; Archaea and Eukaryotes, but not Eubacteria, share...	cl19374	349.587	1.07E-117	64 - 400	specific	232919
Diphthamide_syn superfamily		Putative diphthamide synthesis protein; Human DPH1 is a candidate tumor suppressor gene. DPH2 from...	-	349.587	1.07E-117	64 - 400	superfamily	267727

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_20589	PHATRDRAFT_20589	194015	132558	426724	Cre09.g408500.t1.1	AT5G62030.1	297671

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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