33578 Rab
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33578 chr_4 Rab 462901 463617 - Rab

Synonyms

NCBI ID Ensembl Genomes exon ID
7442097 Thaps33578.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0078

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0222
 0.32

Most Highly Correlated Transcripts

1210

hypothetical protein
0.8869

37509

(VAT3) vATP-synt_AC39 superfamily
0.8848

4179

hypothetical protein
0.8843

40522

(VAT1) V-ATPase_V1_B
0.8792

7505

hypothetical protein
0.8773

789

S_TKc
0.8765

37665

ATP-synt_F superfamily
0.8717

262564

VATPase_H superfamily
0.8698

6402

hypothetical protein
0.8644

11268

hypothetical protein
0.8638

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rab Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Rab GTPases form... cl17170 219.25 4.91E-72 15 - 178 specific 206640
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 219.25 4.91E-72 15 - 178 superfamily 266525

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44216 PHATRDRAFT_44216 178074 225518 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0000160 GO:0003677 GO:0006355 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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