33580 ABCC_MRP_domain2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33580 chr_4 ABCC_MRP_domain2 2048291 2052158 + ABCC_MRP_domain2

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0313

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0093
 0.41

Most Highly Correlated Transcripts

6894

COG1741
0.8657

36650

hypothetical protein
0.8177

13064

GCS superfamily
0.8152

4712

Enkurin
0.8105

38051

AAA_17 superfamily
0.7786

bd1938

(bd1938) NA
0.7531

plastidpF

0.7476

8258

CHD
0.7259

2523

hypothetical protein
0.7243

25159

hypothetical protein
0.7226

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCC_MRP_domain2 ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is... cl17201 353.722 2.29E-113 894 - 1123 specific 213211
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 325.963 2.19E-103 247 - 449 superfamily 266551
ABCC_MRP_domain1 ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This... cl17201 325.963 2.19E-103 247 - 449 specific 213217
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 325.963 2.19E-103 247 - 449 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 85.4224 4.01E-18 2 - 203 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 85.4224 4.01E-18 2 - 203 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 85.4224 4.01E-18 2 - 203 superfamily 250039
MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] - 325.538 2.58E-98 543 - 1144 multi-dom 224055
CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] - 101.949 9.41E-24 265 - 469 multi-dom 224047

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 293120 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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