34233 AdoMet_dcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34233	chr_5	AdoMet_dc	1564688	1567399	-	AdoMet_dc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445173	Thaps34233.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0294

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

168 (RPB1) PRK08566 0.9034	30950 Glyco_hydro_47 0.8982	10873 NA 0.8966	bd258 (bd258) HU 0.8928	25443 hypothetical protein 0.8917	9125 hypothetical protein 0.8867
34710 SNF2_N 0.8769	33699 TRX_family 0.8761	15246 NhaP 0.8741	264072 (HSF43) HSF_DNA-bind superfamily 0.8705

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AdoMet_dc		S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase...	cl00687	95.2616	8.53E-23	254 - 331	specific	251466
AdoMet_dc superfamily		S-adenosylmethionine decarboxylase; This family contains several S-adenosylmethionine decarboxylase...	-	95.2616	8.53E-23	254 - 331	superfamily	260572

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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