35084 IF4E
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35084 chr_6 IF4E 1938820 1939635 - IF4E

Synonyms

NCBI ID Ensembl Genomes exon ID
7446360 Thaps35084.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0282

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0265
 0.39

Most Highly Correlated Transcripts

bd1891

(bd1891) COG3899
0.8722

bd1487

(bd1487) PLN02688
0.8717

bd1749

(bd1749) NA
0.8266

bd174

(bd174) Tim17 superfamily
0.7835

bd739

(bd739) NA
0.7769

264322

MIF4G
0.7751

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7726

bd1948

(bd1948) NA
0.7701

263554

SK
0.7686

649

SrmB
0.7671

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF4E Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. cl02106 173.554 1.20E-53 34 - 185 specific 250771
IF4E superfamily Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. - 173.554 1.20E-53 34 - 185 superfamily 261179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9731 PHATRDRAFT_9731 204002 242447 460036 Not available AT5G18110.1 309469

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003723 GO:0003743 GO:0005737 GO:0006413 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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