263554 SK
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263554 chr_9 SK 701329 702210 - SK

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps263554.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0283

Most Highly Correlated Transcripts

270379

hypothetical protein
0.9935

262700

Dpy-30 superfamily
0.8622

31758

UBCc
0.8393

37240

LRR_9
0.8254

12172

hypothetical protein
0.8209

263124

RRM_snRNP70
0.8173

264339

steroid binding protein 2
0.8152

261991

NadA superfamily
0.8148

25866

WD40 superfamily
0.81

11628

hypothetical protein
0.809

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic... cl17190 178.133 2.60E-55 104 - 242 specific 238260
NK superfamily Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of... - 178.133 2.60E-55 104 - 242 superfamily 266541

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6807 PHATRDRAFT_6807 162553 292716 Not available Cre10.g436350.t1.1 AT2G21940.4 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004765 GO:0005524 GO:0008652 GO:0007217 GO:0007268 -

GO:0004765

shikimate kinase activity

Details: 
Catalysis of the reaction: ATP + shikimate = 3-phosphoshikimate + ADP + 2 H(+).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008652

cellular amino acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
GO Category: 
BP

GO:0007217

tachykinin receptor signaling pathway

Details: 
The series of molecular signals generated as a consequence of a tachykinin, i.e. a short peptide with the terminal sequence (Phe-X-Gly-Leu-Met-NH2), binding to a cell surface receptor.
GO Category: 
BP

GO:0007268

synaptic transmission

Details: 
The process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.
GO Category: 
BP

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