35182 SETThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
35182	chr_6	SET	435521	439115	-	SET

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451162	Thaps35182.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0192

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0020	0.47	9500 1

Most Highly Correlated Transcripts

24790 Nitro_FMN_reductase superfamily 0.9127	38736 S_TKc 0.9073	261490 HemK 0.9043	3570 PP2Cc 0.9002	2540 hypothetical protein 0.9001	24051 hypothetical protein 0.8994
30701 PRK05279 0.8992	262821 AAA 0.8963	20763 CAF1 0.8963	6997 hypothetical protein 0.8946

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SET		SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on...	cl02566	142.859	5.54E-39	1049 - 1167	specific	214614
SET superfamily		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	-	142.859	5.54E-39	1049 - 1167	superfamily	261347
COG2940		Proteins containing SET domain [General function prediction only]	-	111.069	1.06E-25	1027 - 1191	multi-dom	225491

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_21456	PHATRDRAFT_21456	144309	164183	206556	Cre11.g475950.t1.1	AT5G42400.1	306469

KEGG

KEGG description	KEGG Pathway
Lysine degradation	map00310

GO Terms

Not available -

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