35274 RRM_Srp1p_AtRSp31_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35274 chr_7 RRM_Srp1p_AtRSp31_like 1888771 1890675 - RRM_Srp1p_AtRSp31_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7450615 Thaps35274.3, Thaps35274.2, Thaps35274.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0318

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0229
 0.40

Most Highly Correlated Transcripts

20223

RRM_HP0827_like
0.8046

bd174

(bd174) Tim17 superfamily
0.7933

bd1487

(bd1487) PLN02688
0.7908

bd1939

(bd1939) NA
0.7863

36223

CAP_ED
0.7822

39812

Sun
0.7622

bd381

(bd381) NA
0.7518

8259

hypothetical protein
0.7433

261258

(ZFP7) PHD
0.7213

31859

Sm_B
0.7212

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_Srp1p_AtRSp31_like RNA recognition motif found in fission yeast pre-mRNA-splicing factor Srp1p, Arabidopsis thaliana... cl17169 110.998 2.69E-30 188 - 257 specific 240679
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 110.998 2.69E-30 188 - 257 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47737 PHATRDRAFT_47737 259001 Not available Not available Cre16.g674250.t1.2 AT3G61860.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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