35423 (CEN1) PTZ00183
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35423 chr_7 (CEN1) PTZ00183 1050157 1050887 - PTZ00183

Synonyms

NCBI ID Ensembl Genomes exon ID
7444142 Thaps35423.1, Thaps35423.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0095

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0105
 0.42

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9379

3803

hypothetical protein
0.899

21713

UbiH
0.8967

1672

Peptidase_S9 superfamily
0.8936

1871

hypothetical protein
0.8874

11479

hypothetical protein
0.8832

4512

hypothetical protein
0.8826

7025

(Tp_Myb2R6) L-asparaginase_like superfamily
0.8808

3204

hypothetical protein
0.8805

23170

hypothetical protein
0.8801

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 68.7285 4.45E-16 93 - 154 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 68.7285 4.45E-16 93 - 154 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 68.7285 4.45E-16 93 - 154 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 68.7285 4.45E-16 93 - 154 superfamily 238008
PTZ00183 centrin; Provisional - 231.502 5.41E-78 12 - 160 multi-dom 185503

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 434941 Cre11.g468450.t1.2 AT3G50360.1 515347

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0005509 GO:0001539 GO:0009288 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0001539

ciliary or bacterial-type flagellar motility

Details: 
Cell motility due to movement of cilia or flagella.
GO Category: 
BP

GO:0009288

bacterial-type flagellum

Details: 
A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
GO Category: 
CC

Add comment

Log in to post comments