8777 SPXThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8777	chr_11a	SPX	507660	509679	-	SPX

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448333	Thaps8777.3, Thaps8777.6, Thaps8777.5, Thaps8777.4, Thaps8777.2, Thaps8777.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0316

Most Highly Correlated Transcripts

12810 KAP95 0.9129	261056 (APB3) Adaptin_N 0.9097	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.9027	9270 hypothetical protein 0.9	5694 hypothetical protein 0.8923	262797 Sec7 0.8882
21655 hypothetical protein 0.8869	33287 (UBA2) Ube1 0.8848	20461 DnaJ 0.8838	1255 Nic96 superfamily 0.8826

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SPX superfamily		SPX domain; We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue...	-	70.5373	3.11E-14	168 - 330	superfamily	251734
SPX superfamily		SPX domain; We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue...	-	70.5373	3.11E-14	168 - 330	superfamily	251734

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	272626	255859	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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