35816 (GAPD2) PRK08955
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35816 chr_8 (GAPD2) PRK08955 862240 863467 + PRK08955

Synonyms

NCBI ID Ensembl Genomes exon ID
7449838 Thaps35816.3, Thaps35816.1, Thaps35816.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

31829

CBS_like
0.917

31006

RaiA
0.9137

7160

hypothetical protein
0.9007

268773

Gst
0.8981

6243

Macro superfamily
0.8973

262207

Trp-synth-beta_II superfamily
0.8964

21941

hypothetical protein
0.8937

40193

NA
0.8937

35409

plant_peroxidase_like superfamily
0.8922

9795

hypothetical protein
0.8903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... cl19935 221.658 2.61E-71 159 - 321 specific 251539
Gp_dh_C superfamily Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; GAPDH is a tetrameric NAD-binding... - 221.658 2.61E-71 159 - 321 superfamily 268288
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... cl17742 195.803 1.86E-61 5 - 154 specific 249536
Gp_dh_N superfamily Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; GAPDH is a tetrameric NAD-binding... - 195.803 1.86E-61 5 - 154 superfamily 266804
PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated - 466.9 9.07E-165 6 - 338 multi-dom 169599

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23598 PHATRDRAFT_23598 266589 225158 365287 Cre07.g354200.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004365 GO:0006096 GO:0051287 GO:0006006 GO:0008943 -

GO:0004365

glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity

Details: 
Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
GO Category: 
MF

GO:0006096

glycolysis

Details: 
The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

GO:0006006

glucose metabolic process

Details: 
The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
GO Category: 
BP

GO:0008943

NA

Details: 
NA
GO Category: 
NA

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