3587 SRPBCC superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3587	chr_3	SRPBCC superfamily	1312121	1313212	+	SRPBCC superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451719	Thaps3587.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0457

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0006	0.41	0.00092 110

Most Highly Correlated Transcripts

270222 0.8928	13448 Sec1 0.8891	261400 NA 0.8691	37118 FeThRed_B 0.8688	5664 hypothetical protein 0.8671	16295 FBPase 0.8657
7801 hypothetical protein 0.8531	16114 PLN02350 0.8519	269624 TIM_phosphate_binding superfamily 0.8502	4022 hypothetical protein 0.8496

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SRPBCC superfamily		START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; SRPBCC domains...	-	114.635	9.10E-31	126 - 313	superfamily	265438

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37532	PHATRDRAFT_37532	163263	149768	196943	Cre02.g107750.t1.2	AT4G01650.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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