3629 UCH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3629 chr_3 UCH 1402103 1403996 + UCH

Synonyms

NCBI ID Ensembl Genomes exon ID
7451279 Thaps3629.2, Thaps3629.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0384

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0285
 0.31

Most Highly Correlated Transcripts

bd886

(bd886) NA
0.9238

bd1670

(bd1670) SUL1
0.9109

4668

hypothetical protein
0.9016

4781

hypothetical protein
0.8957

5120

hypothetical protein
0.8826

5425

hypothetical protein
0.8715

4796

hypothetical protein
0.8707

bd1852

(bd1852) NA
0.8678

9652

MDR8
0.8663

bd765

(bd765) NA
0.8656

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... cl02553 171.897 5.68E-49 241 - 592 specific 239072
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 171.897 5.68E-49 241 - 592 superfamily 261337
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 206.875 4.70E-61 239 - 591 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre06.g250750.t1.2 AT4G39910.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0004221 GO:0006511 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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