36477 3a01204
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36477 chr_10 3a01204 550588 552588 + 3a01204

Synonyms

NCBI ID Ensembl Genomes exon ID
7446846 Thaps36477.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0325

Most Highly Correlated Transcripts

28816

(RPC1) PRK08566
0.8411

6150

hypothetical protein
0.8382

22847

hypothetical protein
0.8363

8366

hypothetical protein
0.8295

263650

NAD_binding_8 superfamily
0.8269

23048

hypothetical protein
0.8212

17492

COG1179
0.8202

13308

PLN02948
0.8194

263997

(APA1) Adaptin_N
0.8182

4347

hypothetical protein
0.8179

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 189.684 6.10E-56 50 - 289 superfamily 266551
ABC2_membrane ABC-2 type transporter; ABC-2 type transporter. cl17235 130.07 2.10E-34 393 - 603 specific 250332
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 130.07 2.10E-34 393 - 603 superfamily 266576
3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]. - 299.654 6.28E-92 76 - 664 multi-dom 233207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50096 PHATRDRAFT_50096 147881 7034 428787 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

Add comment

Log in to post comments