263997 (APA1) Adaptin_NThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263997	chr_13	(APA1) Adaptin_N	415305	418265	-	Adaptin_N

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445750	Thaps263997.1, Thaps263997.3, Thaps263997.6, Thaps263997.4, Thaps263997.5, Thaps263997.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0177

Most Highly Correlated Transcripts

263994 Adaptin_N 0.9659	2581 hypothetical protein 0.9259	11261 WD40 superfamily 0.9254	5916 rad3 0.9252	bd392 (bd392) DEXDc 0.9206	5273 DUF221 superfamily 0.9102
41687 (APB1) Adaptin_N 0.9087	24413 LCAT 0.9082	6541 hypothetical protein 0.9071	25593 hypothetical protein 0.9065

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Alpha_adaptin_C superfamily		Alpha adaptin AP2, C-terminal domain; Alpha adaptin is a hetero tetramer which regulates clathrin-...	-	88.9144	1.26E-20	831 - 930	superfamily	251207
Adaptin_N		Adaptin N terminal region; This family consists of the N terminal region of various alpha, beta and...	-	307.227	1.88E-93	26 - 601	multi-dom	250737

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54442	PHATRDRAFT_54442	258120	Not available	70774	Cre12.g488850.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0006461 GO:0006886 GO:0030130 -

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