36502 IF4E
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36502 chr_10 IF4E 286367 286769 - IF4E

Synonyms

NCBI ID Ensembl Genomes exon ID
7447034 Thaps36502.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0399

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0175
 0.42

Most Highly Correlated Transcripts

2463

hypothetical protein
0.9258

269624

TIM_phosphate_binding superfamily
0.9193

37934

GRX_PICOT_like
0.9155

37118

FeThRed_B
0.913

261400

NA
0.9082

3261

hypothetical protein
0.9053

11960

hypothetical protein
0.9041

34632

hypothetical protein
0.9038

34295

COPIIcoated_ERV
0.8961

20569

NAT_SF
0.8902

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF4E Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. cl02106 180.102 2.76E-58 1 - 130 specific 250771
IF4E superfamily Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E. - 180.102 2.76E-58 1 - 130 superfamily 261179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
6922 Not available 241388 292209 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003723 GO:0003743 GO:0005737 GO:0006413 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

Add comment

Log in to post comments