36511 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36511 chr_10 PseudoU_synth superfamily 629102 631087 - PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445914 Thaps36511.2, Thaps36511.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0322

Most Highly Correlated Transcripts

1778

hypothetical protein
0.8887

bd518

(bd518) p450 superfamily
0.8737

bd1075

(bd1075) NA
0.8718

21387

Peptidase_M48 superfamily
0.8706

33033

YSH1
0.8704

bd1100

(bd1100) NA
0.8621

bd1870

(bd1870) NA
0.8546

5694

hypothetical protein
0.8392

8261

DUF819 superfamily
0.8359

35129

(Tp_Myb2R9) PLN03142
0.8338

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 209.794 3.08E-64 140 - 356 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14067 PHATRDRAFT_14067 180172 218539 Not available Cre17.g702400.t1.2 AT5G51140.1 310955

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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