21387 Peptidase_M48 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21387 chr_2 Peptidase_M48 superfamily 1585434 1587228 + Peptidase_M48 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443079 Thaps21387.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0070
 0.44

Most Highly Correlated Transcripts

33033

YSH1
0.8756

36511

PseudoU_synth superfamily
0.8706

9591

efThoc1 superfamily
0.8596

20800

XRN_N superfamily
0.8582

1778

hypothetical protein
0.8389

21629

RPA_interact_C
0.8381

15605

PKc_like superfamily
0.8355

262980

DEXDc
0.8344

4071

hypothetical protein
0.8341

2666

hypothetical protein
0.8337

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_M48 superfamily Peptidase family M48; Peptidase family M48. - 100.979 2.90E-24 338 - 509 superfamily 264511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40690 PHATRDRAFT_40690 191546 245256 463010 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0016020 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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