36597 trmE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36597 chr_11a trmE 800893 803061 + trmE

Synonyms

NCBI ID Ensembl Genomes exon ID
7444515 Thaps36597.2, Thaps36597.1, Thaps36597.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

9384

hypothetical protein
0.9115

260923

BcrAD_BadFG superfamily
0.8944

12971

WD40 superfamily
0.8911

36650

hypothetical protein
0.878

4712

Enkurin
0.8701

2523

hypothetical protein
0.8585

23331

RAP
0.852

264632

COG0826
0.8469

20985

COG5593
0.8447

31516

SIK1
0.8434

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
trmE trmE is a tRNA modification GTPase; TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria... cl17170 175.375 3.54E-51 441 - 615 specific 206727
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 175.375 3.54E-51 441 - 615 superfamily 266525
TrmE_N superfamily GTP-binding protein TrmE N-terminus; This family represents the shorter, B, chain of the homo-... - 121.735 2.41E-32 187 - 331 superfamily 204472
TrmE_N superfamily GTP-binding protein TrmE N-terminus; This family represents the shorter, B, chain of the homo-... - 121.735 2.41E-32 187 - 331 superfamily 204472
GTPase_Cys_C superfamily Catalytic cysteine-containing C-terminus of GTPase, MnmE; This short C-terminal region contains the... - 93.3651 8.14E-23 626 - 696 superfamily 257176
GTPase_Cys_C superfamily Catalytic cysteine-containing C-terminus of GTPase, MnmE; This short C-terminal region contains the... - 93.3651 8.14E-23 626 - 696 superfamily 257176
trmE tRNA modification GTPase TrmE; Reviewed - 439.161 4.17E-147 187 - 699 multi-dom 235392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40348 Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

Add comment

Log in to post comments