264632 COG0826
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264632 chr_19b_31 COG0826 140113 143721 + COG0826

Synonyms

NCBI ID Ensembl Genomes exon ID
7444371 Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

24332

hypothetical protein
0.9401

3315

hypothetical protein
0.9316

22482

hypothetical protein
0.9238

40529

COG2319
0.9224

23061

hypothetical protein
0.9179

24429

PRMT5 superfamily
0.9162

22036

ElaC
0.9109

268812

HrpA
0.9083

8541

PRK00142
0.9077

22417

Sun
0.9068

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] cl03113 307.304 3.79E-95 126 - 472 specific 223896
Peptidase_U32 superfamily Peptidase family U32; Peptidase family U32. - 63.439 2.37E-11 808 - 990 superfamily 261590
DUF3656 superfamily Collagenase; This domain family is found in bacteria, archaea and eukaryotes, and is approximately... - 77.1951 2.34E-16 582 - 704 superfamily 257020
DUF3656 superfamily Collagenase; This domain family is found in bacteria, archaea and eukaryotes, and is approximately... - 77.1951 2.34E-16 582 - 704 superfamily 257020
Peptidase_U32 superfamily Peptidase family U32; Peptidase family U32. - 63.439 2.37E-11 808 - 990 superfamily 261590

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 457888 Cre01.g052601.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008233 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

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