36629 PLN03227
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36629 chr_11a PLN03227 795099 797108 + PLN03227

Synonyms

NCBI ID Ensembl Genomes exon ID
7445422 Thaps36629.2, Thaps36629.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

4650

hypothetical protein
0.8147

5938

hypothetical protein
0.7994

33353

TRX_family
0.7989

3051

hypothetical protein
0.7963

9351

hypothetical protein
0.7916

3146

hypothetical protein
0.7896

8121

hypothetical protein
0.7868

25513

Mnd1
0.7856

5701

hypothetical protein
0.7827

6434

hypothetical protein
0.782

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN03227 serine palmitoyltransferase-like protein; Provisional cl18945 676.623 0 248 - 648 specific 178766
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 676.623 0 248 - 648 superfamily 267298
bioF 8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonic acid synthetase is an alternate name.... - 202.499 1.14E-58 247 - 626 multi-dom 129937

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 251536 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009058 GO:0016769 GO:0004758 GO:0017059 -

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

GO:0016769

transferase activity, transferring nitrogenous groups

Details: 
Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0004758

serine C-palmitoyltransferase activity

Details: 
Catalysis of the reaction: L-serine + H(+) + palmitoyl-CoA = 3-dehydrosphinganine + CO(2) + CoA.
GO Category: 
MF

GO:0017059

serine C-palmitoyltransferase complex

Details: 
An enzyme complex that catalyzes the transfer of a palmitoyl on to serine, forming 3-dehydro-D-sphinganine.
GO Category: 
CC

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