25513 Mnd1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25513	chr_19b_31	Mnd1	82763	84118	-	Mnd1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444363	Thaps25513.3, Thaps25513.2, Thaps25513.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0216

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0130	0.40	0.00008 4.1

Most Highly Correlated Transcripts

41166 UMPK 0.9117	37920 cyclophilin_ABH_like 0.9044	6983 hypothetical protein 0.9035	33075 RimI 0.8985	37934 GRX_PICOT_like 0.8971	2378 hypothetical protein 0.8941
33353 TRX_family 0.8922	38285 (PMSR1) MsrA 0.8866	6132 hypothetical protein 0.8856	22679 CbiO 0.8852

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG5124 superfamily		Protein predicted to be involved in meiotic recombination [Cell division and chromosome...	-	110.815	9.00E-30	5 - 205	superfamily	227453
Mnd1		Mnd1 family; This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a...	-	153.936	1.58E-46	17 - 205	multi-dom	202833

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54296	PHATRDRAFT_54296	273989	295346	416873	Cre06.g278850.t1.1	AT4G29170.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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