3698 (Tp_HSF_1a) HSF_DNA-bind
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3698 chr_3 (Tp_HSF_1a) HSF_DNA-bind 1587993 1588852 - HSF_DNA-bind

Synonyms

NCBI ID Ensembl Genomes exon ID
7449518 Thaps3698.2, Thaps3698.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0037

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0090
 0.39

Most Highly Correlated Transcripts

bd211

(bd211) Maf_Ham1 superfamily
0.9448

bd1306

(bd1306) NA
0.8981

bd1037

(bd1037) Ycf66_N
0.8874

bd1403

(bd1403) NA
0.8872

bd208

(bd208) DUF3529
0.887

ThpsCp134

(rpl34) ribosomal protein L34
0.884

bd1757

(bd1757) NA
0.882

bd718

(bd718) PRK10387
0.8767

bd1380

(bd1380) ycf39
0.8691

bd1342

(bd1342) psaL
0.8675

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind HSF-type DNA-binding; HSF-type DNA-binding. cl12113 93.7186 3.21E-24 28 - 127 specific 249865
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 93.7186 3.21E-24 28 - 127 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43051 PHATRDRAFT_43051 216140 147396 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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