37493 purU
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37493 chr_14 purU 128110 129353 + purU

Synonyms

NCBI ID Ensembl Genomes exon ID
7451631 Thaps37493.1, Thaps37493.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0020

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0127
 0.38

Most Highly Correlated Transcripts

4064

NADB_Rossmann superfamily
0.9262

261400

NA
0.9155

30701

PRK05279
0.9139

9115

DnaJ
0.9099

16295

FBPase
0.8896

26991

GRX_GRXh_1_2_like
0.8891

268908

Trans_IPPS_HH
0.8753

33353

TRX_family
0.8703

24758

hypothetical protein
0.8698

3814

hypothetical protein
0.8695

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FMT_core_Formyl-FH4-Hydrolase_C Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4... cl00395 368.813 6.38E-128 180 - 375 specific 187717
FMT_core superfamily Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of... - 368.813 6.38E-128 180 - 375 superfamily 260403
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 59.4958 1.54E-11 93 - 169 superfamily 263730
purU formyltetrahydrofolate deformylase; Reviewed - 404.104 1.60E-140 92 - 376 multi-dom 235676

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
24267 PHATRDRAFT_12031 PHATRDRAFT_12031 268822 295325 Not available Cre10.g430450.t1.2 AT5G47435.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009058 GO:0016742 GO:0006189 GO:0008864 -

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

GO:0016742

hydroxymethyl-, formyl- and related transferase activity

Details: 
Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0006189

'de novo' IMP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
GO Category: 
BP

GO:0008864

formyltetrahydrofolate deformylase activity

Details: 
Catalysis of the reaction: 10-formyltetrahydrofolate + H(2)O = (6S)-5,6,7,8-tetrahydrofolate + formate + H(+).
GO Category: 
MF

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