3795 HAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3795	chr_3	HA	1816775	1818665	-	HA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445336	Thaps3795.3, Thaps3795.2, Thaps3795.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0411

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0076	0.36	820 4800

Most Highly Correlated Transcripts

1768 hypothetical protein 0.8502	12899 AAA 0.8424	1502 hypothetical protein 0.8341	1081 hypothetical protein 0.8141	268194 (Tp_Myb4R1b) SANT 0.8138	22918 hypothetical protein 0.8136
25435 hypothetical protein 0.8123	269231 MFS 0.8122	32366 Pumilio 0.8099	6232 hypothetical protein 0.8089

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	61.1673	8.99E-12	211 - 276	superfamily	251968
HA superfamily		Helicase associated domain; This short domain is found in multiple copies in bacterial helicase...	-	61.1673	8.99E-12	211 - 276	superfamily	251968

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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