38030 ABM superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38030 chr_18 ABM superfamily 405591 406137 - ABM superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442980 Thaps38030.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0276

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0094
 0.37

Most Highly Correlated Transcripts

bd1857

(bd1857) DnaJ
0.8916

bd208

(bd208) DUF3529
0.8703

bd1216

(bd1216) Delta6-FADS-like
0.869

bd687

(bd687) NA
0.845

bd1949

(bd1949) NA
0.8325

bd1380

(bd1380) ycf39
0.8162

5389

hypothetical protein
0.8154

bd1820

(bd1820) Fasciclin
0.8145

bd1078

(bd1078) NA
0.8026

bd890

(bd890) NA
0.8021

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABM superfamily Antibiotic biosynthesis monooxygenase; This domain is found in monooxygenases involved in the... - 83.6229 4.68E-21 76 - 166 superfamily 263948

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38325 PHATRDRAFT_38325 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005737 GO:0016491 GO:0017000 -

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0017000

antibiotic biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
GO Category: 
BP

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