38132 Rhomboid
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38132 chr_18 Rhomboid 114005 115219 + Rhomboid

Synonyms

NCBI ID Ensembl Genomes exon ID
7442177 Thaps38132.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0381

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

270222

0.8925

35136

NA
0.8692

bd933

(bd933) NA
0.8683

bd877

(bd877) NA
0.8644

16114

PLN02350
0.8275

bd648

(bd648) NA
0.8269

33649

(PSB6) proteasome_beta_type_6
0.8104

3600

Bromodomain superfamily
0.8099

bd643

(bd643) NA
0.7997

bd815

(bd815) NA
0.7965

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rhomboid Rhomboid family; This family contains integral membrane proteins that are related to Drosophila... cl11446 112.317 1.14E-29 174 - 327 specific 250801
Rhomboid superfamily Rhomboid family; This family contains integral membrane proteins that are related to Drosophila... - 112.317 1.14E-29 174 - 327 superfamily 264372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5543 PHATRDRAFT_5543 271704 153314 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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