38190 VTC1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38190 chr_18 VTC1 272865 273533 - VTC1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442954 Thaps38190.3, Thaps38190.1, Thaps38190.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0475

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

21220

KU superfamily
0.8342

9500

hypothetical protein
0.8303

32316

Peptidase_C97
0.8218

12836

EEP superfamily
0.8211

261500

(atpC_2) ATP-synt_C superfamily
0.8209

13448

Sec1
0.8109

12899

AAA
0.8088

16405

SIR2 superfamily
0.8071

22765

hypothetical protein
0.8042

25233

hypothetical protein
0.7915

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones] cl09954 101.299 5.53E-28 27 - 132 specific 227589
DUF202 superfamily Domain of unknown function (DUF202); This family consists of hypothetical proteins some of which... - 101.299 5.53E-28 27 - 132 superfamily 263935

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15281 PHATRDRAFT_15281 Not available Not available 47033 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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