38331 YIP1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38331	chr_19b_31	YIP1 superfamily	107858	109019	-	YIP1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444366	Thaps38331.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0209

Most Highly Correlated Transcripts

261400 NA 0.9403	264492 Peptidase_C1A 0.9342	24906 hypothetical protein 0.9311	33353 TRX_family 0.9279	1857 p23_NUDC_like 0.9266	23728 WD40 superfamily 0.924
2488 hypothetical protein 0.9228	268526 hypothetical protein 0.9226	36964 PLN02716 0.9221	18462 EMP24_GP25L 0.9174

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
YIP1 superfamily		Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]	-	113.332	2.59E-29	208 - 386	superfamily	227412

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14945	PHATRDRAFT_14945	180792	178862	429722	Not available	AT2G36300.1	540638

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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