38576 PLN03227
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38576 chr_22 PLN03227 44782 46791 + PLN03227

Synonyms

NCBI ID Ensembl Genomes exon ID
7449468 Thaps38576.2, Thaps38576.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0215

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

10302

hypothetical protein
0.8772

33353

TRX_family
0.8771

4737

hypothetical protein
0.8644

8872

hypothetical protein
0.8619

21689

Pro_isomerase
0.8615

6735

hypothetical protein
0.8529

2211

hypothetical protein
0.8523

8138

hypothetical protein
0.8498

25513

Mnd1
0.8489

11214

SOUL
0.8487

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN03227 serine palmitoyltransferase-like protein; Provisional cl18945 676.623 0 248 - 648 specific 178766
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 676.623 0 248 - 648 superfamily 267298
bioF 8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonic acid synthetase is an alternate name.... - 202.499 1.14E-58 247 - 626 multi-dom 129937

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_41807 PHATR_41807 197039 283728 Not available Cre03.g146507.t1.1 AT4G36480.2 350782

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009058 GO:0016769 GO:0004758 GO:0017059 -

GO:0009058

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

GO:0016769

transferase activity, transferring nitrogenous groups

Details: 
Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0004758

serine C-palmitoyltransferase activity

Details: 
Catalysis of the reaction: L-serine + H(+) + palmitoyl-CoA = 3-dehydrosphinganine + CO(2) + CoA.
GO Category: 
MF

GO:0017059

serine C-palmitoyltransferase complex

Details: 
An enzyme complex that catalyzes the transfer of a palmitoyl on to serine, forming 3-dehydro-D-sphinganine.
GO Category: 
CC

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