39470 PTZ00132
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39470 chr_2 PTZ00132 759393 760602 - PTZ00132

Synonyms

NCBI ID Ensembl Genomes exon ID
7446514 Thaps39470.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0290

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9306

bd258

(bd258) HU
0.8912

25918

Porin3 superfamily
0.8866

7151

hypothetical protein
0.885

37410

TCP1_alpha
0.8719

25279

TCP1_zeta
0.8697

23018

RNase_PH superfamily
0.8691

261607

IF4E
0.8676

21905

hypothetical protein
0.8663

9247

hypothetical protein
0.8657

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ran Ras-related nuclear proteins (Ran)/TC4 family of small GTPases; Ran GTPase is involved in diverse... cl17170 371.249 6.12E-131 77 - 242 specific 206643
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 371.249 6.12E-131 77 - 242 superfamily 266525
PTZ00132 GTP-binding nuclear protein Ran; Provisional - 437.587 2.59E-156 68 - 281 multi-dom 240284

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51169 PHATRDRAFT_51169 270765 244083 449047 Cre03.g191050.t1.2 AT5G55190.1 288419

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005525 GO:0007264 GO:0006886 GO:0015031 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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