39497 Sar1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39497 chr_2 Sar1 931687 932455 - Sar1

Synonyms

NCBI ID Ensembl Genomes exon ID
7446546 Thaps39497.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0210

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0173
 0.35

Most Highly Correlated Transcripts

270222

0.9468

18462

EMP24_GP25L
0.9341

39299

(ARF3) Arf1_5_like
0.9297

25068

hypothetical protein
0.9291

37934

GRX_PICOT_like
0.9234

23960

hypothetical protein
0.9177

21482

NADH-u_ox-rdase
0.9174

21249

hypothetical protein
0.9123

269624

TIM_phosphate_binding superfamily
0.9121

25040

NA
0.909

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sar1 Sar1 is an essential component of COPII vesicle coats; Sar1 is an essential component of COPII... cl17170 319.224 1.46E-111 2 - 191 specific 206645
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 319.224 1.46E-111 2 - 191 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 96.1831 1.65E-24 16 - 142 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54420 PHATRDRAFT_54420 210389 189802 443224 Cre11.g468300.t1.2 AT1G56330.1 284940

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0005525 GO:0007264 GO:0006886 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

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