39615 (COP5) AP_delta-COPI_MHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39615 chr_2 (COP5) AP_delta-COPI_MHD 1689489 1691556 + AP_delta-COPI_MHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7452283 Thaps39615.2, Thaps39615.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0100

Most Highly Correlated Transcripts

16295

FBPase
0.9204

13448

Sec1
0.9118

269624

TIM_phosphate_binding superfamily
0.9091

3180

hypothetical protein
0.9057

264492

Peptidase_C1A
0.9046

3693

SWIB
0.8972

23833

hypothetical protein
0.8966

24525

hypothetical protein
0.8956

24146

hypothetical protein
0.8951

3890

COG0398
0.8947

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AP_delta-COPI_MHD Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit; COPI complex-... cl10970 274.108 4.08E-88 315 - 545 specific 211365
AP_MHD_Cterm superfamily C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD); This... - 274.108 4.08E-88 315 - 545 superfamily 264154

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30436 PHATRDRAFT_30436 223974 299561 Not available Cre02.g089100.t1.2 AT5G05010.2 296404

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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