39799 (GDCP) PLN02414
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39799 chr_3 (GDCP) PLN02414 354805 358131 - PLN02414

Synonyms

NCBI ID Ensembl Genomes exon ID
7444012 Thaps39799.1, Thaps39799.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0159
 0.26

Most Highly Correlated Transcripts

270222

0.9459

269942

SHMT
0.9053

36208

(GDCT) PLN02319
0.8597

260953

COG2423
0.8462

28326

lytB_ispH
0.8351

23675

hypothetical protein
0.8271

6529

hypothetical protein
0.8224

269147

NAD_binding_8 superfamily
0.817

38724

plant_peroxidase_like superfamily
0.8165

269699

hypothetical protein
0.8136

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine... cl18945 441.285 1.70E-145 480 - 879 specific 99737
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 441.285 1.70E-145 480 - 879 superfamily 267298
GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine... cl18945 441.285 1.70E-145 480 - 879 specific 99737
AAT_I superfamily Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent... - 441.285 1.70E-145 480 - 879 superfamily 267298
PLN02414 glycine dehydrogenase (decarboxylating) - 1753.5 0 1 - 973 multi-dom 178035

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22187 PHATRDRAFT_22187 276117 317976 Not available Cre12.g534800.t1.1 AT4G33010.2 495458

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0005509 GO:0004375 GO:0005961 GO:0006544 GO:0004374 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0004375

glycine dehydrogenase (decarboxylating) activity

Details: 
Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2.
GO Category: 
MF

GO:0005961

NA

Details: 
NA
GO Category: 
NA

GO:0006544

glycine metabolic process

Details: 
The chemical reactions and pathways involving glycine, aminoethanoic acid.
GO Category: 
BP

GO:0004374

NA

Details: 
NA
GO Category: 
NA

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