411 (SCS2) PTZ00187
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
411 chr_4 (SCS2) PTZ00187 1679830 1680910 + PTZ00187

Synonyms

NCBI ID Ensembl Genomes exon ID
7443730 Thaps411.2, Thaps411.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0367

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

31362

(SCS1) PLN00124
0.9188

11175

Mitofilin
0.8565

40586

(GMD1) PLN02653
0.8418

40713

SodA
0.8402

22565

UhpC
0.8368

789

S_TKc
0.8279

35518

(GYK) PLN02295
0.8267

9388

hypothetical protein
0.8228

28125

PLN00203
0.817

21978

hypothetical protein
0.8164

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CoA_binding CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including... cl17356 121.519 4.16E-34 35 - 128 specific 251432
CoA_binding superfamily CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including... - 121.519 4.16E-34 35 - 128 superfamily 266646
Ligase_CoA superfamily CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains,... - 81.9185 2.26E-19 181 - 303 superfamily 249950
PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional - 500.782 6.73E-179 10 - 320 multi-dom 240307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42015 PHATRDRAFT_42015 269015 244389 417649 Cre03.g193850.t1.2 AT5G08300.1 557468

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0004776 GO:0042709 GO:0045244 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004776

succinate-CoA ligase (GDP-forming) activity

Details: 
Catalysis of the reaction: GTP + succinate + CoA = GDP + succinyl-CoA + phosphate.
GO Category: 
MF

GO:0042709

succinate-CoA ligase complex

Details: 
A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP or GTP.
GO Category: 
CC

GO:0045244

succinate-CoA ligase complex (GDP-forming)

Details: 
A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming GTP.
GO Category: 
CC

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