31362 (SCS1) PLN00124
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31362 chr_1 (SCS1) PLN00124 2491119 2492616 + PLN00124

Synonyms

NCBI ID Ensembl Genomes exon ID
7449074 Thaps31362.2, Thaps31362.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0367

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0274
 0.39

Most Highly Correlated Transcripts

411

(SCS2) PTZ00187
0.9188

789

S_TKc
0.8896

40713

SodA
0.8828

1788

hypothetical protein
0.8823

9947

hypothetical protein
0.8764

1417

GpcrRhopsn4 superfamily
0.8605

38266

(GPI1) pgi
0.8557

11175

Mitofilin
0.8497

9459

Thioredoxin_like superfamily
0.8469

12189

hypothetical protein
0.8439

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ATP-grasp_2 superfamily ATP-grasp domain; ATP-grasp domain. - 226.738 1.72E-71 40 - 249 superfamily 254804
Ligase_CoA superfamily CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains,... - 105.416 2.79E-27 308 - 428 superfamily 249950
PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional - 719.222 0 1 - 433 multi-dom 177736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26921 PHATRDRAFT_26921 278922 318186 436533 Cre17.g703700.t1.1 AT2G20420.1 352366

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0004775 GO:0009361 GO:0042709 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004775

succinate-CoA ligase (ADP-forming) activity

Details: 
Catalysis of the reaction: ATP + succinate + CoA = ADP + succinyl-CoA + phosphate.
GO Category: 
MF

GO:0009361

succinate-CoA ligase complex (ADP-forming)

Details: 
A heterodimeric enzyme complex, composed of an alpha and beta chain, most usually found in (but not limited to) bacteria. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP.
GO Category: 
CC

GO:0042709

succinate-CoA ligase complex

Details: 
A heterodimeric enzyme complex, usually composed of an alpha and beta chain. Functions in the TCA cycle, hydrolyzing succinyl-CoA into succinate and CoA, thereby forming ATP or GTP.
GO Category: 
CC

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