41583 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41583 chr_8 WD40 764247 765594 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7449814 Thaps41583.2, Thaps41583.3, Thaps41583.4, Thaps41583.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0140

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9408

24373

hypothetical protein
0.938

41655

Chloroa_b-bind
0.9299

30701

PRK05279
0.9292

22307

TRAPP
0.9222

26991

GRX_GRXh_1_2_like
0.917

4578

hypothetical protein
0.9166

42380

RRM_ist3_like
0.9152

17747

rplO
0.9132

23388

DUF106
0.9119

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 201.409 6.65E-62 36 - 331 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 201.409 6.65E-62 36 - 331 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 144.846 2.96E-39 16 - 337 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13526 PHATR_13526 Not available Not available 65105 Cre06.g255400.t1.2 AT2G43770.1 Not available

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0000250 -

GO:0000250

lanosterol synthase activity

Details: 
Catalysis of the reaction: (S)-2,3-epoxysqualene = lanosterol. This is a cyclization reaction that forms the sterol nucleus.
GO Category: 
MF

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