42380 RRM_ist3_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42380 chr_14 RRM_ist3_like 404328 405014 - RRM_ist3_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7452659 Thaps42380.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0218

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9315

36879

BolA
0.9173

24373

hypothetical protein
0.9166

41583

WD40
0.9152

10898

hypothetical protein
0.9131

41655

Chloroa_b-bind
0.9123

1807

hypothetical protein
0.9109

22307

TRAPP
0.9105

37920

cyclophilin_ABH_like
0.9091

33075

RimI
0.9082

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_ist3_like RNA recognition motif in ist3 family; This subfamily corresponds to the RRM of the ist3 family that... cl17169 181.683 1.96E-58 25 - 113 specific 240857
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 181.683 1.96E-58 25 - 113 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 75.7538 1.17E-16 20 - 136 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9701 PHATRDRAFT_9701 165878 168305 443247 Cre06.g280550.t1.1 AT3G47120.1 262195

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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