4160 PMT_2 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4160 chr_4 PMT_2 superfamily 340746 343790 - PMT_2 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442074 Thaps4160.2, Thaps4160.3, Thaps4160.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0206

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0231
 0.32

Most Highly Correlated Transcripts

261400

NA
0.9171

9880

SGNH_hydrolase superfamily
0.91

25077

hypothetical protein
0.9071

22963

WD40 superfamily
0.9048

268908

Trans_IPPS_HH
0.9039

36669

TPT
0.9024

16295

FBPase
0.9002

22248

PLN00162
0.8986

28028

RPN6
0.8964

262510

Alg6_Alg8 superfamily
0.8918

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PMT_2 superfamily Dolichyl-phosphate-mannose-protein mannosyltransferase; This family contains members that are not... - 176.046 3.21E-47 23 - 478 superfamily 267511

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 469383 Cre09.g387245.t1.1 Not available 302104

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004576 GO:0006486 GO:0016020 GO:0004579 -

GO:0004576

oligosaccharyl transferase activity

Details: 
Catalysis of the transfer of a oligosaccharyl group to an acceptor molecule, typically another carbohydrate or a lipid.
GO Category: 
MF

GO:0006486

protein glycosylation

Details: 
A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0004579

dolichyl-diphosphooligosaccharide-protein glycotransferase activity

Details: 
Catalysis of the reaction: dolichyl diphosphooligosaccharide + protein L-asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by glycosylamine linkage to protein L-asparagine.
GO Category: 
MF

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