41632 Asp
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41632 chr_8 Asp 1019201 1020754 - Asp

Synonyms

NCBI ID Ensembl Genomes exon ID
7452883 Thaps41632.1, Thaps41632.4, Thaps41632.3, Thaps41632.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

23779

hypothetical protein
0.9215

bd410

(bd410) HNHc
0.9052

16390

Peptidase_C1A
0.903

15093

Peptidase_S10 superfamily
0.8987

38360

Peptidase_C1 superfamily
0.8981

20708

MPP_ACP5
0.8964

36297

pepsin_retropepsin_like superfamily
0.8871

bd1841

(bd1841) CAP10 superfamily
0.8869

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8805

3922

hypothetical protein
0.879

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH; Pepsin-... cl11403 253.887 2.19E-81 92 - 407 specific 133138
pepsin_retropepsin_like superfamily Cellular and retroviral pepsin-like aspartate proteases; This family includes both cellular and... - 253.887 2.19E-81 92 - 407 superfamily 264354
Asp Eukaryotic aspartyl protease; Aspartyl (acid) proteases include pepsins, cathepsins, and renins.... - 277.633 3.89E-90 91 - 409 multi-dom 249520

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004194 GO:0006508 GO:0004190 GO:0004192 -

GO:0004194

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004190

aspartic-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004192

NA

Details: 
NA
GO Category: 
NA

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