41829 PTZ00141
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41829 chr_10 PTZ00141 388485 390303 - PTZ00141

Synonyms

NCBI ID Ensembl Genomes exon ID
7451081 Thaps41829.2, Thaps41829.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0324

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0038
 0.59

Most Highly Correlated Transcripts

plastid_psb28

0.8189

262083

Uup
0.7739

plastidpG

0.7732

plastidpF

0.7553

plastidpB

0.7356

bd1959

(bd1959) NA
0.7345

ThpsCp117

(rpoA) RNA polymerase alpha subunit
0.7269

2537

Patatin_and_cPLA2 superfamily
0.7002

25587

hypothetical protein
0.6985

11664

DUF3510
0.6893

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EF1_alpha Elongation Factor 1-alpha (EF1-alpha) protein family; EF1 is responsible for the GTP-dependent... cl17170 344.86 3.71E-117 8 - 246 specific 206670
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 344.86 3.71E-117 8 - 246 superfamily 266525
EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent... cl02786 136.555 9.07E-39 344 - 447 specific 239676
Translation_factor_III superfamily Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G... - 136.555 9.07E-39 344 - 447 superfamily 261448
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 97.2374 9.66E-25 250 - 335 superfamily 261449
PTZ00141 elongation factor 1- alpha; Provisional - 464.22 1.67E-160 4 - 451 multi-dom 185474

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 270244 300345 462457 Cre06.g263450.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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